Authors
Wang, QinghuaAbdul, Shabbir S.
Almeida, Lara
Ananiadou, Sophia
Balderas-Martínez, Yalbi I.
Batista-Navarro, Riza
Campos, David
Chilton, Lucy
Chou, Hui-Jou
Contreras, Gabriela
Cooper, Laurel
Dai, Hong-Jie
Ferrell, Barbra
Fluck, Juliane
Gama-Castro, Socorro
Gkoutos, Georgios
George, Nancy
Jensen, Lars J.
Irin, Afroza K.
Jue, Toni R.
Jimenez, Silvia
Madan, Sumit
Keseler, Ingrid
McQuilton, Peter
Matos, Sergio
Mort, Matthew
Milacic, Marija
Pafilis, Evangelos
Natarajan, Jeyakumar
Rao, Shruti
Pereira, Emiliano
Salgado, David
Silva, Raquel M.
Rinaldi, Fabio
Rothfels, Karen
Su, Chu-Hsien
Subramani, Suresh
Singh, Onkar
Stefancsik, Raymund
Vasilevsky, Nicole
Wang, Xiaodong
Tadepally, Hamsa D.
Tsaprouni, Loukia G.
Matis-Mitchell, Sherri
McEntyre, Johanna
Chatr-Aryamontri, Andrew
Laulederkind, Stanley J.F.
Van Auken, Kimberly
Rodriguez-Esteban, Raul
Pundir, Sangya
Orchard, Sandra
Hirschman, Lynette
Wu, Cathy H.
Schaeffer, Mary
Lu, Zhiyong
Arighi, Cecilia N.
Issue Date
2016-09-01
Metadata
Show full item recordAbstract
Fully automated text mining (TM) systems promote efficient literature searching, retrieval, and review but are not sufficient to produce ready-to-consume curated documents. These systems are not meant to replace biocurators, but instead to assist them in one or more literature curation steps. To do so, the user interface is an important aspect that needs to be considered for tool adoption. The BioCreative Interactive task (IAT) is a track designed for exploring user-system interactions, promoting development of useful TM tools, and providing a communication channel between the biocuration and the TM communities. In BioCreative V, the IAT track followed a format similar to previous interactive tracks, where the utility and usability of TM tools, as well as the generation of use cases, have been the focal points. The proposed curation tasks are user-centric and formally evaluated by biocurators. In BioCreative V IAT, seven TM systems and 43 biocurators participated. Two levels of user participation were offered to broaden curator involvement and obtain more feedback on usability aspects. The full level participation involved training on the system, curation of a set of documents with and without TM assistance, tracking of time-on-task, and completion of a user survey. The partial level participation was designed to focus on usability aspects of the interface and not the performance per se In this case, biocurators navigated the system by performing pre-designed tasks and then were asked whether they were able to achieve the task and the level of difficulty in completing the task. In this manuscript, we describe the development of the interactive task, from planning to execution and discuss major findings for the systems tested.Database URL: http://www.biocreative.org.Citation
Wang Q, Abdul SS, Almeida L, Ananiadou S, Balderas-Martínez YI, Batista-Navarro R, Campos D, Chilton L, Chou HJ, Contreras G, Cooper L, Dai HJ, Ferrell B, Fluck J, Gama-Castro S, Gkoutos G, George N, Jensen LJ, Irin AK, Jue TR, Jimenez S, Madan S, Keseler I, McQuilton P, Matos S, Mort M, Milacic M, Pafilis E, Natarajan J, Rao S, Pereira E, Salgado D, Silva RM, Rinaldi F, Rothfels K, Su CH, Subramani S, Singh O, Stefancsik R, Vasilevsky N, Wang X, Tadepally HD, Tsaprouni L, Matis-Mitchell S, McEntyre J, Chatr-Aryamontri A, Laulederkind SJF, Van Auken K, Rodriguez-Esteban R, Pundir S, Orchard S, Hirschman L, Wu CH, Schaeffer M, Lu Z, Arighi CN (2016) 'Overview of the interactive task in BioCreative V', Database, 2016 (), pp.-.Publisher
Oxford University Press (OUP)Journal
DatabasePubMed ID
27589961PubMed Central ID
PMC5009325Additional Links
https://academic.oup.com/database/article/doi/10.1093/database/baw119/2630507https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5009325/
Type
ArticleLanguage
enISSN
1758-0463ae974a485f413a2113503eed53cd6c53
10.1093/database/baw119
Scopus Count
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